Allele Registry UI
fix
Improve namespace navigation, overlap query validation, and page metadata
N/A
2026-06-11
- Added validation for coordinate overlap queries, including coordinate range limits.
- Added range limit validation for descriptor overlap queries.
- Added notice for coordindate and descriptor overlap range limit.
- Added typeahead suggestion filter to remove descriptors that are over the range limit.
- Added end-to-end tests covering namespace title updates, coordinate and descriptor overlap query validation.
- Added contextual navigation links between related namespace pages, currently available for SV queries and range searches.
- Added navigation from descriptor detail pages to identifier pages.
- Added namespace page layout for consistent spacing and padding. For now, the range query page layout remains idiosyncratic.
- Fixed browser page titles so they update correctly when navigating between SV, PGx, and HLA pages without a full page reload.
- Fixed descriptor page spacing and padding issues.
Allele Registry UI
feature
Make the "Home" navbar link configurable per environment
N/A
2026-05-28
- The "Home" navbar link now reads from the UI_NAV_HOME_HREF env variable.
- Added migration script to set the correct landing page URL per environment.
- BRL staging links to the internal staging landing page.
- RSP staging links to the test landing page.
- RSP production links to the production ClinGen landing page.
- Extracted home href check into dedicated test, refactored not-found test to navigate via Explore menu.
Allele Registry UI
fix
Move "Explore" menu next to "Home" in the menu.
N/A
2026-05-26
- Moved the "Explore" submenu out from "More" and next to "Home".
Allele Registry UI
fix
Disable range queries.
N/A
2026-05-21
- Temporarily disabling range queries.
- Update logging for timeouts in playwright's page#waitForResponse.
Allele Registry UI
fix
More migration script fixes
N/A
2026-05-12
- Fixed migration configuration updates.
- Fixed .env source file loading.
Allele Registry UI
fix
Standardize migration script logging
N/A
2026-05-11
- Standardized logging of migration scripts.
- Fixed configuration updates by migration scripts.
- Added error handling in migration scripts for failed creation of deploy configuration backups.
Allele Registry UI
fix
Fix url encoding in typeahead search and client-side navigation
N/A
2026-05-08
- Fixed url encoding of descriptors
Allele Registry UI
new-feature
Update mount and refine navbar behavior
N/A
2026-05-05
- Updated mount to /allele/ui
- Refined navbar styles for better consistency with ClinGen sites
- Made docs and news links resolve relative to current host
- Updated stats page table links to stay within active tab
- Fixed descriptor search on stats pages to support direct lookup
Allele Registry UI
new-feature
Introduce structural variant support with aggregation, advanced queries, and improved search and navigation
N/A
2026-04-28
- Extended Allele Registry support for structural variants, including deletions, insertions, inversions, and duplications.
- Added one-time and automated aggregation of structural variants from ClinVar, gnomAD, and dbVar.
- Introduced API and UI support for descriptor- and identifier-based searches.
- Enabled advanced range queries for grouping structural variants by genomic coordinates.
- Added comprehensive tutorials for API usage.
- Introduced a home page and dedicated pages for SV, PGx, and HLA.
- Improved typeahead-backed search inputs and overall form interactions.
- Added dynamic HTML head titles for improved SEO and clearer browser tab naming.
- Moved navbar configuration into application settings to simplify navigation management and extensibility.
- Made several changes to make UI placeholders, headers, titles, etc. configurable.
- Added collapse-all/expand-all toggle to linked data accordion.
- Improve clipboard functionality with legacy browser support
- Fixed loading state logic during range query processing.
- Added theming system for rapid theming changes.
- Added server-sent events (SSE) with tests for real-time update and integrate client-side SSE-driven data refresh logic.
- Added configurable sourcemap support.
- Added dark mode and theme toggle.
Allele Registry UI
update
Improve descriptor range query filter UX, query context display, and pagination control consistency.
N/A
2026-02-24
- Fixed URL query param synchronization for descriptor range filter controls so page state reflects route state reliably.
- Updated range query behavior so changing SV type or partial-overlap filters immediately refreshes results (without requiring an additional search action).
- Added a compact active-query summary in the results header showing descriptor, selected types, and partial-overlap status.
- Refined responsive header layout to keep query summary and pagination controls readable and compact across mobile and larger screens.
- Replaced the native page-size selector with Reka UI Select for visual and interaction consistency.
Allele Registry UI
new-feature
Add 'Linked Data' panel to SV variant detail page
N/A
2026-02-16
- Added 'Linked Data' panel to SV variant detail page.
- Fixed SV descriptor typehead search so that CASVid is used instead of the SV descriptor.
Allele Registry UI
new-feature
Add SV variant detail page and descriptor range query; update CA OpenCRAVAT content.
N/A
2026-02-09
- Added SV variant detail page.
- Added SV descriptor range query page.
- Updated OpenCRAVAT content for CA variants, including score extraction for rendering.
- Added new agg executor registry and loader for ldPartial transforms (boot-time initialized).
- Unified detail builders to use the agg executor registry for Linked Data sections.
Allele Registry UI
new-feature
The Linked Data accordion on the allele record page now has collapse-all & expand-all support.
N/A
N/A
- For quickly collapsing the sometimes large Linked Data sections, there is a new collapse-all / expand-all toggle button.
- Regardless of the possibly mixed expansion state of the accordion, this toggle will force all sections to be collapsed or expanded.
Allele Registry UI
update
Change sorting rules for Variants in Literature pmcid/pmid ids and reduce the list cap.
N/A
2025-08-26
- When Linked Data contains high 10s, 100s, or even 1000s of items, the CAR UI shall not show ALL the values. Low utility.
- If valuable, the linked data owner has a page with all the content or better an API exposing all the content and full render is out of scope for the Linked Data teasers and intent on the CAR UI variant page.
- Thus in many cases, the list is capped at a max and a message about that is displayed.
- This cap has been reduced for Variants in Literature. Thus, sorting determines which items are rendered.
- Ensure any pmcids sort before pmids. Mostly cosmetic than a utility preference.
- Sort larger numerical ids before lower numerical ids as a proxy for recent-article-mentions-first.
- Fixed - OpenCRAVAT hint text now correctly mentions the Cancer Genome Census.
Allele Registry UI
new-feature
Add Variants-in-Literature and OpenCRAVAT 'Linked Data' sections, XAHLA & XAPGX record rendering improvements.
N/A
2025-08-20
- Add Variants-in-Literature section to 'Linked Data', one of several efforts to map Variants to publications where that Variant appears to be mentioned. The associated paper pmid/pmcids are provided with link-outs.
- Like MaveDB, OpenCRAVAT is now pushing entity content to ClinGen LDH, putting them in charge of both the content and the schedule that keeps the content in sync and relevant. They share significant aggregregated Variant related information, available from the LDH API.
- Add OpenCRAVAT section to 'Linked Data' with link-out to their record pages as well as a list of the in silico prediction scores and attendant ACMG v3 tags, as supplied by OpenCRAVAT.
- Improvements to the the XAHLA and XAPGX record rendering pages, including improved type-ahead functionality and UI component enhancements. These will be exposed for the first time in subsequent updates.
Allele Registry UI
new-feature
Update MaveDB 'Linked Data' rendering.
N/A
2025-07-30
- MaveDB themselves is now pushing entity docs to ClinGen LDH.
- This replaces the previous one-time dump-parse-load ClinGen did to populate the MaveDB content, putting MaveDB in charge of both the content and the schedule that keeps the content in sync and relevant.
- Adjusted the MaveDB 'Linked Data' rendering accordingly, with links to the full MaveDB record.
- Includes a keyword summary extracted via an AI question-answer pipeline from MaveDB's short score set description text. The relevant extracted keywords are retrieved JIT from a ClinGen LDH Val-Map API cache.
- Changed the order of the accordion sections in the 'Linked Data' UI panel as suggested by stakeholders.
- Removes code related to the removed ClinVar Alleles 'Linked Data' resource type.
Allele Registry UI
new-feature
Change 'Linked Data' namespace section order.
N/A
2025-06-14
- Changes the order of the namespace sections in the 'Linked Data' UI panel as suggested by stakeholders.
- Removes code related to the removed ClinVar Alleles 'Linked Data' resource type.
Allele Registry UI
new-feature
Change to config logic and minor UI tweak.
N/A
2025-06-13
- The namespace configuration files now determine whether a resource within that namespace is rendered or not. Previously, disabling rendering of a resource type in the required deleting code directories.
- The indented subordinate fields rendered below the Descriptor on the detailed page have a slightly smaller font.
Allele Registry UI
new-feature
Added Allele G and P Group to detail page.
N/A
2025-05-18
- Added Allele G Group and Allele P Group to detail page for xahla.
- Changed table headers and prop-names from font-bold to font-semibold.
Allele Registry UI
new-feature
Added /api/news endpoint.
N/A
2025-05-16
- Clients can now fetch latest news from CAR-UI via GET /api/news.
- Caching done by the service was fixed so that under high-load pages are still served quickly, but content changes will now be reflected after several seconds.
- Added displayed error information for each upstream service acting as possible sources of Linked Data content that cannot be reached. Previously, only displayed for the aggregation service itself.
Allele Registry UI
new-feature
Added 'ClinVar Allele' linked data
N/A
2025-04-29
- Previously, the ClinVar allele id was available but not rendered in the Linked Data panel. It is now displayed in the 'NCBI & NCI' section along with other ClinVar links already present.
Allele Registry UI
new-feature
Add xahla and xapgx detail page and ClinVar Allele to Linked Data partial.
N/A
2025-04-27
- The initial versions of the new xahla and xapgx id detail pages were deployed and hosts HLA descriptor data with linked data and PGx descriptor data with linked data, respectively.
Allele Registry UI
new-feature
Deployment of ClinVar sync daemon
N/A
2025-04-15
- Previously, updating the Allele Registry's ClinVar content was a ad hoc manual process with high person-hour cost and written in a mix of C and Ruby.
- This is replaced with a new nodejs-based syncing daemon that pulls weekly updates from ClinVar, registers new alleles and updates ClinVar linked data.
- This affects all ClinVar linked data information.
Allele Registry UI
update
Category label tweak, config org changes
N/A
2025-04-07
- Former 'Predicted Effect Evidence' linked data category is now more broad 'Variant Effect Evidence', appropriate for functional/experimental evidence data sites as well.
- Some reorg of configurations used for linked data display labels, categorization.
- Code incorporates the CACN linked data fix only present on ClinGen production and BRL development hosts.
Allele Registry UI
new-feature
Added MutSpliceDB to Linked Data partial, and Linked Data categorization.
N/A
2025-03-28
- Linked Data categorization is configurable, mapping section labels to Linked Data resource types and setting a section order.
- Sections are presented in an accordion which starts full expanded.
Allele Registry UI
Deployed The ClinGen CAR UI Service.
N/A
2024-10-08